It is more important to have management records for yields than for traits. For greenhouse experiments, it is not necessary to include informaton on fertilizaton, lighting, or greenhouse temperature. Managements can be entered via the web interface. First enter the management, and then associate it with one or more treatments. To associate a management with multiple treatments, first create the management, then edit the management and add treatment relationships.
Preparing the csv file can be done in any spreadsheet program such as Excel or Google Sheets. The insertion is straightforward, but requires familiarity with the bash shell as well as administrative access to the Postgres database. Required Fields the spreadsheet or CSV file must contain the following column headings:.
These columns map to fields in the database in the citations, treatments, and managements field. Each row must have non-empty values in each of these columns.
Moreover, the citation columns must match exactly one row in the citations row of the database and the treatment name must match exactly one of the treatment rows associated with the matched citation. Optional Fields The table may also contain the following column headings:. Each optional column heading corresponds to an optional field in the database managements table.
The column can contain one or more empty rows. The complete usage instructions also obtainable by running. For additional information, see Github issue Run 'rake dbconf' to view the contents of this file on the command line.
Log in to the production machine and cd to the root directory of production deployment of the BETYdb Rails app. The command-line argument specifying the input CSV file path should match the location you uploaded it to. If your machine login doesn't match a PostgreSQL user name that has insert permissions on the production database, you will have to use the '-U' option to specify a user who does have such permission. For the copy of the BETYdb database connected to this copy of the Rails app, ensure that at least the citations and the treatments tables are up-to-date with the production copy of the BETYdb database.
If you have different databases specified for your development and your production environments, be sure that the environment you specify with the '--environment' option points to the right database. Upload the output file to the production server and apply it to the production database using the psql command given above. Option C : Run the script on your local machine using a Rails environment connected to the production database. This will log you into the production server, but at the same time it will connect port on your local machine with port the PostgreSQL server port on the production machine.
The choice of for port number is somewhat arbitrary, but whatever value you use should match the value you specified for the port number in the database. Plant functional types PFTs are used to group plants for statistical modeling and analysis.
PFTs are associated with both a specific set of priors, and a subset species for which the traits and yields data will be queried. In many cases, it is appropriate to use default PFTs e. In other cases, it is necessary to define PFTs for a specific project. For example, to query a specific set of priors or a subset of a species, a new PFT may be defined. Species that are found or cultivated in the United States should be in the Plants table.
Look it up there first. API endpoints have been implemented to upload data to respective tables. Learn more. Uploading multiple files directly to Amazon S3 using Rails 3. Asked 9 years, 5 months ago. Active 5 years, 9 months ago. Viewed 8k times. This issue has been bothering me for many hours and I can't seem to find a solution to it. Improve this question. Dan L. Dan L Dan L 4, 3 3 gold badges 34 34 silver badges 70 70 bronze badges.
Use this: blueimp. The plugin page had some very helpful examples that pointed me in the right direction and I've implemented exactly what I want. If you make an answer to the question instead of a comment, I will gladly accept your answer.
Thank you very much, you helped save me a lot of effort. Can you share how you did this with multiple files and S3? I can upload single files, but can't quite figure out how to upload more than one at a time.
If you want to write code to make all of the different S3 API calls client side, generate the policies, handle the specific S3 errors, etc, yourself then use jquery file upload.
Currently I'm developing a specific project that is using Ruby 1. Using Rails 3. If so, what version: Ruby 2. The first release of rails that officially support ruby 2. I deployed several applications running 3. Assume this is data directory inside your public section.
So, create this directory and check the permissions. As this is not a database-based application, we can keep whatever name is comfortable to us.
Assume we have to create a DataFile model. This method will be called by the application controller. Here File is a ruby object and join is a helper function that will concatenate the directory name along with the file name and will return the full file path.
Next, to open a file in write mode, we are using the open helper function provided by the File object.
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